rs47165851 SNP Detail

Summary

• ID
  rs47165851
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53764800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATCTCCA AGACTCACAA
  GTCCACAGAA GCTATCTCCC AGCAGTTCCT TAGTTTATTT CATGTTTTCA TTAGCTAGCT
  TTAAAAAATG TTCCTTAGAT ATAGATATAG TTTATATCTC TAGGTTGTGG TTTACTTATA
  TTGTAGTACC TGAATATATT TATGTGCATT ATAAGTAGAT AGATATACAT GCACACACAA
  T
  ATCAGTTCTT TTGTTTCTAT TCAGTGATGG TGTTGATACA TTCTGAAAAT ATTTCAAACT
  TTTTCTACAT TTTTAACTGA GAACATAGAG ACAAATAGAG AATACACAAA GAAAAATTAT
  AATTTTCCCT CTTTCAACTG TGGCAAATGA GATGATTAGT AACATTTCCT GTTTTATGTT
  CCTGATCCTT CCTGATAATT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss137758443	ENSMUSSNP5026567	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs47165851					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53764800 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr256685	regulatory region 256685	1801 bp proximal
Rr263732	regulatory region 263732	1888 bp proximal