rs47168179 SNP Detail

Summary

• ID
  rs47168179
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60741966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGG AAGTGAGATG TCCTGACCAT
  K
  AGGCTTTCCA GCTCAGAGCT TCAGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	MSM/Ms	SM/J
ss147248041	ENSMUSSNP3610331	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss325640171	CHEV_18_60768548	CHEVERUD	SCREENING_POP	f	SNP		T		G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	MSM/Ms	SM/J
rs47168179					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60741966 () rs orientation: forward

Symbol	Name	Function Class
Rr538592	regulatory region 538592	1415 bp distal
Rr538593	regulatory region 538593	288 bp proximal
Rr538594	regulatory region 538594	1201 bp proximal
Synpo	synaptopodin	within coordinates
Tssr153456	transcription start site region 153456	1164 bp downstream
Tssr153457	transcription start site region 153457	1196 bp downstream