rs47168729 SNP Detail

Summary

• ID
  rs47168729
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:82959229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGG AGAGATGGCT CAGGGGTTAA
  A
  AGCACTGGCT GCTCTTCTCA AGCAC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss132466430	ENSMUSSNP2304055	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs47168729					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:82959229 () rs orientation: forward

Symbol	Name	Function Class
D11Pas76	DNA segment, Chr 11, Pasteur Institute 76	143 bp distal
Gm20234	predicted gene, 20234	416 bp upstream
Rr452895	regulatory region 452895	1152 bp distal
Rr452896	regulatory region 452896	818 bp distal
Rr452897	regulatory region 452897	90 bp proximal
Rr452898	regulatory region 452898	678 bp proximal
Slfn2	schlafen 2	within coordinates
Tssr103640	transcription start site region 103640	1969 bp downstream
Tssr103641	transcription start site region 103641	1867 bp downstream
Tssr103642	transcription start site region 103642	within coordinates
Tssr103643	transcription start site region 103643	875 bp upstream
Tssr103644	transcription start site region 103644	924 bp upstream
Tssr103645	transcription start site region 103645	1105 bp upstream
Tssr103646	transcription start site region 103646	1174 bp upstream
Tssr103647	transcription start site region 103647	1343 bp upstream
Tssr103648	transcription start site region 103648	1413 bp upstream
Tssr103649	transcription start site region 103649	1458 bp upstream
Tssr109639	transcription start site region 109639	1580 bp upstream
Tssr109640	transcription start site region 109640	1112 bp upstream