rs47169022 SNP Detail

Summary

• ID
  rs47169022
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:96077618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTGCTCTTA CCCACTGAGC CATCTCACCA GCCCCAAAAT
  CAAATTTCTA ATTAGAAAAT TCAGCAGCTG GTTTTCCCGG CGAGGGACCC CCAACAGAGA
  A
  GTCCACCAGT GGGAAGGGGA GAGACTGCCT CTACCTCTTC TCTAAATCCC CATCTCCTTT
  CCTCGAGCTG TTAGTAGGCC AGGCAATGGG TATGCTTTA                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145643090	ENSMUSSNP13568	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47169022					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:96077618 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20872	CpG island 20872	617 bp proximal
Mmp15	matrix metallopeptidase 15	1306 bp upstream
Rr668225	regulatory region 668225	1394 bp distal
Rr668226	regulatory region 668226	788 bp proximal
Rr668227	regulatory region 668227	1289 bp proximal
Tssr78982	transcription start site region 78982	1246 bp upstream
Tssr78983	transcription start site region 78983	1268 bp upstream