rs47169176 SNP Detail

Summary

• ID
  rs47169176
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88276434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGTGATC CTCACTCAGG
  TCTGGGCCCC AGACCCAACC TCAGGGAACT GGGCTTGTTG GGGTGAAGCC CTGAACCTCT
  GGCTCTCATA CTCGCCCGTG TTGGACACCC ACATGTTCTG ATGAGCTTTC ATCTGCTTCA
  ATCGGTCCTT GTCCACTTCC TGCTTGGTGA GGACGAAGAA GAGGATACCA CAGGGGAAGC
  M
  GATGGCCCAG GCTAGCCCCA CGGCTTTCAT GGGGTTCTTG CCCCTGTTTC TGGGAATGTA
  TTCTAGCTCA GGGGAGAGGG GCTCGGGCTC CTCCTTGCAT TCTGGTGAGC TGTGGCTCTG
  CAGTGCTCTG GTCCTGTTCT GGGAAGCCTT GTTAGCTGTG GCTCCAGAGA GGCTCCCCCG
  GAGGACGCGG GCATTTCTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60289486	NES15800015	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47169176					SNP	A	A	A	A	A	A	C	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60289486	NES15800015	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88276434 () rs orientation: forward

Symbol	Name	Function Class
Gm50041	predicted gene, 50041	within coordinates
Rr333904	regulatory region 333904	34 bp distal
Rr343663	regulatory region 343663	within coordinates