rs47170325 SNP Detail

Summary

• ID
  rs47170325
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:79041210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATACAGCT CAGCCTCTTG
  AGAGGGGCTG ATTAATGAAT AGTCAGGGGG AGTGGTCTAA GCTTCCACAG GCCTGGCTAT
  CATTTCTCAA CATGGACAAA GTCAAGAGAG GATGATAGTT GACTTGTGTG TCTCTAATAA
  CCGAGGGATA CATAGGGGCC AAGTGGGAAG GAGAGGAAAG AACCCACCTT ACAAAAGGTC
  S
  AGAAACAGGA CTTGTCTGTC AACATGCAAC TCTGCATCCT AATTCCTCTC AACCTTCAGG
  CAAAAGAGAA GAGGAGCGGG AGGAGGAGGA GGACGAGAGC ACAACGACGT CTTCTATCAT
  TTTGCATGTC TGTGTAGGGT TGTTTTGTCT GTGTAATTTT TGCATTTCCC ATAAGCATTT
  GAATCTATGT TTTAATTTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss61653827	NES17604431	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C	C	C	C	C	G		C	C	C	C
ss324107630	CHEV_12_80095423	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs47170325					SNP	C	C	G	C	C	C	C	C	C	G	G	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61653827	NES17604431	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:79041210 () rs orientation: forward

Symbol	Name	Function Class
D12Mit4	DNA segment, Chr 12, Massachusetts Institute of Technology 4	846 bp distal
Rr387477	regulatory region 387477	1704 bp upstream
Tmem229b	transmembrane protein 229B	within coordinates