rs47170797 SNP Detail

Summary

• ID
  rs47170797
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45865789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTTTTCT CTTGCCACTC
  AGCCTTCGAG GGCCTTATCT TGTCACCTTC AACTTACAAG GCCAGCTGGC TTTCTGAGGC
  AAGGAGGTCT GTCTCCTTCA CCTCCCTGTG ACCGAGCTCT TTCAATTCTA AGTTGGCCCC
  ATCTGGAGTT GTCTGAGCCA CGCAAGGCTG GGAGCCTGTT TTCCCCTCAC CCCGACCTCA
  S
  AGACTGAGAG CTAGATTGAG AGCCAGGTCA CAGAGCAGAC CAGACCGGTC CTGATCACAG
  CTGGTGGCAG GGAACTTCCC AAGCTGCCCC GCTGGAGCTG CCCGGGAATG CTGGTGGAAA
  CCAGGTCTTG GCAGGGGGAG GGCGGCTCAA AGGCTGGCGG AGAGGAAAGG GGCAGCATCA
  AGTCCAGGCC GGGCGCCCAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136420936	ENSMUSSNP2652939	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47170797					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45865789 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A830035O19Rik	RIKEN cDNA A830035O19 gene			within coordinates
Cpgi21698	CpG island 21698			within coordinates
Rr678012	regulatory region 678012			380 bp distal
Rr678013	regulatory region 678013			476 bp proximal
Sidt2	SID1 transmembrane family, member 2			Intron
				Noncoding-Transcript-Variant
Tssr84819	transcription start site region 84819			836 bp upstream
Tssr89292	transcription start site region 89292			1607 bp upstream
Tssr89293	transcription start site region 89293			807 bp upstream
Tssr89294	transcription start site region 89294			475 bp downstream
Tssr89295	transcription start site region 89295			679 bp downstream
Tssr89296	transcription start site region 89296			705 bp downstream
Tssr89297	transcription start site region 89297			735 bp downstream
Tssr89298	transcription start site region 89298			762 bp downstream
Tssr89299	transcription start site region 89299			788 bp downstream