rs47171375 SNP Detail

Summary

• ID
  rs47171375
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:99768189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCA TACGAGTCCA CTGATCTACG
  A
  GAAAAACAGG GCTGGGGAAA AACTC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145524257	ENSMUSSNP2609556	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss322348209	CHEV_7_107267492	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47171375					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99768189 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19477	CpG island 19477	1870 bp proximal
Pold3	polymerase (DNA-directed), delta 3, accessory subunit	within coordinates
Rr652064	regulatory region 652064	1651 bp proximal
Tssr73730	transcription start site region 73730	1541 bp downstream