rs47172139 SNP Detail

Summary

• ID
  rs47172139
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27775386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAG CTGAAGTCGC CATTTAGTTT
  R
  AGAGTCCCTT CTCTGAGATG CTGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148630970	ENSMUSSNP1964566	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss322125242	CHEV_7_28860980	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47172139					SNP	G	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27775386 () rs orientation: forward

Symbol	Name	Function Class
Fcgbp	Fc fragment of IgG binding protein	within coordinates
Tssr65346	transcription start site region 65346	773 bp downstream
Tssr65347	transcription start site region 65347	746 bp downstream
Tssr65348	transcription start site region 65348	719 bp downstream
Tssr65349	transcription start site region 65349	659 bp downstream
Tssr65350	transcription start site region 65350	633 bp downstream
Tssr65351	transcription start site region 65351	611 bp downstream