rs47172194 SNP Detail

Summary

• ID
  rs47172194
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30841210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGCAGAGGA CCCAGCTTGG GTTCCCAGCA CCCACTTCAA
  AGAGCTCACA ACCATCTGTA ACTCCAGTTC TAGGAGGTTT GACGCCCTCC TTTGGCTTTC
  R
  TGTGGACTGC AGACATGAGG TACACATATG CAGGATAAAA AGAAATAAAT ACTTAAAACA
  AAAACAAACA AGCAAGCCTT TAATCCCAAC ACTCGGGAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148700728	ENSMUSSNP4545077	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss322139665	CHEV_7_31926804	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47172194					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30841210 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18838	CpG island 18838	902 bp proximal
Gramd1a	GRAM domain containing 1A	within coordinates
Rr645030	regulatory region 645030	1525 bp distal
Rr645031	regulatory region 645031	1180 bp distal
Tssr71945	transcription start site region 71945	842 bp downstream