rs47172409 SNP Detail

Summary

• ID
  rs47172409
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:36418679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAATCAAAG AATTTTACTT
  TTTATAGCTA TATTTATAAG ATAAAAAAGC ACTTTGTCAT TTGCTTAACA CAATAATCAG
  GATTGCAGTG AATTTTCTAG GAAAAACCCA ACAATCAGCT TTTTTGCCTT AAAACTAAGA
  AGCTGCAGAC TCCCTTTCTT TGAAAGCAGC TTTTTCAGCA GTGGCTCCCC TGCTGTGCTT
  R
  ATTCTCAGTC AAAATGTGAA CCATTCTCAG GCTTTGCTGA ACCAGCAGAT AAAGTCTTAG
  CCATTTTTAT TTTCCAACAT GAAACACAGA ACATTCAGTC ATTCAGACAA CGAGACAAAA
  CACACATGGA TTGACACGTA AACGGATTTG GTGCACCAGA CATTAGACAA CACAAAGAGG
  GCAGAGAACT GTAGAGCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62697329	NES17322096	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47172409					SNP	G	A	A	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62697329	NES17322096	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:36418679 () rs orientation: forward

Symbol	Name	Function Class
Gm54002	predicted gene, 54002	932 bp downstream
Gm66184	predicted gene, 66184	790 bp downstream
H2-T11-ps	histocompatibility 2, T region locus 11, pseudogene	1447 bp downstream
Rr392573	regulatory region 392573	within coordinates