rs47172524 SNP Detail

Summary

• ID
  rs47172524
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:6621541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGGAGTA TGGAGCCCTT
  AGAGAGCTGT GGTTGTCATT TGTCATCTAA ACAGTTGTTG GTTGAATTGT CCAACTGCCT
  ATCAGCCTGG AAGAGTGAAG TACCAAGTCA GTCACCCAGG ACTCTTGCAC ACTCACCTGA
  CTTTCCTCTA TACCTTTCTT CTGTTCTAGT CCCTGAATCT TCTCCCTCCT TCTACCATAC
  W
  TTGCTCTTAA AGTTTGCCCT GCACAATATG CTTGCTATTT ATCAAACAGC AAAAAGAAAA
  AAAAAGCAAA CAAACAAAAT TTAAACCCAT ATTTAGTATT ATTGGTGGTA TTCAAAGCAG
  CATTCAAAGC ATGAATAAGT AAATAGACAG GTAGGTAGGT AGATAGATAG ATAGATAGAT
  AGATAGATAG ATAGGTAGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62614981	NES17310649	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47172524					SNP	T	T	T	T	T	T	A	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62614981	NES17310649	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:6621541 () rs orientation: forward

Symbol	Name	Function Class
Fyb1	FYN binding protein 1	within coordinates
Rr498833	regulatory region 498833	532 bp proximal
Tssr130533	transcription start site region 130533	787 bp upstream
Tssr130534	transcription start site region 130534	819 bp upstream
Tssr133626	transcription start site region 133626	628 bp downstream