rs47172546 SNP Detail

Summary

• ID
  rs47172546
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54815970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTG ATGGCAGAGT GGACAGCCAT
  C
  CTTAAGGGGA GTGGACTAGA TAAAT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss139565777	ENSMUSSNP3401648	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss324638273	CHEV_14_55197350	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs47172546					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54815970 () rs orientation: forward

Symbol	Name	Function Class
Ajuba	ajuba LIM protein	955 bp upstream
Cpgi6463	CpG island 6463	767 bp distal
Gm63340	predicted gene, 63340	within coordinates
Rr389677	regulatory region 389677	431 bp downstream
Rr404101	regulatory region 404101	57 bp downstream
Rr492273	regulatory region 492273	853 bp distal
Rr492274	regulatory region 492274	within coordinates
Rr492275	regulatory region 492275	135 bp distal
Tssr128602	transcription start site region 128602	1015 bp upstream
Tssr128603	transcription start site region 128603	974 bp upstream
Tssr128604	transcription start site region 128604	955 bp upstream
Tssr128605	transcription start site region 128605	936 bp upstream
Tssr128606	transcription start site region 128606	901 bp upstream