rs47172619 SNP Detail

Summary

• ID
  rs47172619
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136347766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATCT CTGATCAAAG CCACACGTAG
  T
  AAGGATCAGG GCTGAGGTTT GGACT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss147573101	ENSMUSSNP538649	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321356428	CHEV_4_136176370	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs47172619					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136347766 () rs orientation: forward

Symbol	Name	Function Class
Rr86434	regulatory region 86434	635 bp proximal
Rr103033	regulatory region 103033	367 bp distal
Rr106544	regulatory region 106544	991 bp proximal
Rr398615	regulatory region 398615	870 bp upstream