rs47173960 SNP Detail

Summary

• ID
  rs47173960
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57172859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGGT GGTGGAGCCA AGAGCTCCGG
  C
  ACGGAGCAGG TTCTATGCCA GACAC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136517981	ENSMUSSNP4486930	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss322971875	CHEV_9_57113383	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47173960					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57172859 () rs orientation: forward

Symbol	Name	Function Class
Gm68485	predicted gene, 68485	within coordinates
Gm68491	predicted gene, 68491	within coordinates
Rr679625	regulatory region 679625	121 bp distal
Rr679626	regulatory region 679626	1709 bp proximal
Tssr89773	transcription start site region 89773	213 bp downstream
Tssr89774	transcription start site region 89774	231 bp downstream