rs47176313 SNP Detail

Summary

• ID
  rs47176313
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:107361236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCT TGAACCCAGG ACCTCCTTCA
  C
  GCTAGGGAAG TGCTTTGCTG AGTCG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss145732427	ENSMUSSNP2137850	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss322825747	CHEV_8_109158504	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs47176313					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:107361236 () rs orientation: forward

Symbol	Name	Function Class
Cdh1	cadherin 1	within coordinates
Rr669236	regulatory region 669236	678 bp distal
Tssr79254	transcription start site region 79254	1685 bp upstream