rs47176365 SNP Detail

Summary

• ID
  rs47176365
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:118533721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTC TTACATGAGA AATAAGAGGA
  R
  AAAAACAGCA AAGGTCCCTT CTTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss137041936	ENSMUSSNP4503028	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss323216708	CHEV_9_118613771	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47176365					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:118533721 () rs orientation: forward

Symbol	Name	Function Class
Itga9	integrin alpha 9	within coordinates
Rr688310	regulatory region 688310	872 bp proximal
Tssr87646	transcription start site region 87646	1294 bp downstream
Tssr87647	transcription start site region 87647	1268 bp downstream
Tssr87648	transcription start site region 87648	1249 bp downstream
Tssr87649	transcription start site region 87649	1207 bp downstream
Tssr87650	transcription start site region 87650	1165 bp downstream
Tssr87651	transcription start site region 87651	1141 bp downstream
Tssr87652	transcription start site region 87652	864 bp downstream