rs47176493 SNP Detail

Summary

• ID
  rs47176493
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40577777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGTGCTA GGTCAGCAGC
  CTAGGGGAGG CGTGACCTCA CCAGGAGCCA AAGAAAGTAG GGATTTCACC CCTACTGTCC
  GTCCGGTGTA ATTTCCCCAT CACACGCAGT GTGCAGGGAA GGTGTGAAAG AGAAGTCTCT
  AGAACCTTCC AGTATTAAAA CAAGACACTT CCCCCCCCCC AAAAAAATAG ATAATCGTAA
  R
  ATGGACTAAT TCCATATGAT TCAGGAGCTG CATCAACAGC TTTGCTGTAG AGGATTCCAA
  ATCAGCAAAT ACAAATTGGA CATTACTTCT GAAAACCACA AGGTGGCGCT CTTTTGCTTT
  TTTTAAACCT AAAAGGGGAT TTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT
  CTTTCTTTCT TTCTTTCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60393134	NES15896683	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47176493					SNP	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60393134	NES15896683	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40577777 () rs orientation: forward

Symbol	Name	Function Class
1700017G19Rik	RIKEN cDNA 1700017G19 gene	716 bp upstream
Rr575827	regulatory region 575827	within coordinates
Rr575828	regulatory region 575828	92 bp proximal
Rr575829	regulatory region 575829	1655 bp proximal
Rr575830	regulatory region 575830	1911 bp proximal
Tssr33066	transcription start site region 33066	710 bp upstream