rs47177133 SNP Detail

Summary

• ID
  rs47177133
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40123271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCGGAGGT CTGCATGGGC
  CTCAGTGGGC TAGAATGAAT TGTAGTCCAT ACAGGGTCCC TGGAGCCACA AGGGCAGCAT
  CCATGTCTTG GGTTTTTGTC CAGCCTCTGG CTCTCTGGCT CATGGACTGC AGCACTACAC
  ACACCATCCT CTTCCTCCTT TGGCTGTCTT ACCACTTTTT CCTGAAGCAC CAAACCCGAG
  Y
  CTGTCTCCGG ACCTGGAAAT CCTTAACTTA CATTAGCAGT CACTTTCTCT ACATTAAGCA
  GCATGTTCCC AGCTTCCAAA GACTCAGACA AAAAGTTAAA AACAAAACCA ACCAAACAAA
  CAAACAAACA AAAAGCCAAA CAAAGGCCCC CCTAAAACAA GCCCATCCAT TTAATCCTCC
  TCCTAGTCAA GAAGAGTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60723905	NES16366406	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47177133					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60723905	NES16366406	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40123271 () rs orientation: forward

Symbol	Name	Function Class
Cpgi194	CpG island 194	1650 bp proximal
Gm16894	predicted gene, 16894	within coordinates
Il1r2	interleukin 1 receptor, type II	601 bp upstream
Rr29353	regulatory region 29353	1129 bp proximal
Rr396010	regulatory region 396010	1625 bp upstream
Tssr62	transcription start site region 62	599 bp upstream
Tssr6411	transcription start site region 6411	622 bp upstream
Tssr6412	transcription start site region 6412	653 bp upstream
Tssr6413	transcription start site region 6413	664 bp upstream
Tssr6414	transcription start site region 6414	1087 bp upstream
Tssr6415	transcription start site region 6415	1980 bp upstream
Tssr11414	transcription start site region 11414	1712 bp downstream