rs47177212 SNP Detail

Summary

• ID
  rs47177212
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85418104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGCACAGAA ATGTGGAGCT CAATGGTGTG GCACATCTTG
  TTCAGCCCAA CCAGGCAGAT GCCCGGTAGG TTGATTAGCC ATTGTCATTG GTGGTGGTAC
  Y
  GGAGATAGAG CCCAGGCCTT CATGCGTGCT AAGCAGTGGC TGAGCAACAG CTCCAGCTCC
  CAAGAGGTCC CTGGAATGAG GCTTTCTGGG GACTAATCCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss60644221	NES16269468	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs47177212					SNP	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60644221	NES16269468	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85418104 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20706	CpG island 20706	1426 bp distal
Rr666578	regulatory region 666578	1662 bp distal
Trmt1	tRNA methyltransferase 1	within coordinates