rs47177352 SNP Detail

Summary

• ID
  rs47177352
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:16422747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCATGGAG AACACATCAC
  AGTGGATTGT GCAGGGAAAG TGTCCATTAT TCTTACCACA ACCACAACCC AGTGTGATCA
  GCTGGTGGCT GTGACTTAAA GCTCAGTAGG ATCCTGAATG TGATGACCAG AGGACACAGC
  TCCTTTAGAG ACTTTTATCC TTCTAGAGCC ACAGAGTCTA GAGATTTGGA GATGGAAACA
  Y
  AAATTCTAGA AAATGGGTAT CAAGGGTTTA TGGGAACTCA AGACATTCCC AAGTCTACAT
  GCTAATTTCC AGACTTATGT ATTCATCCAA TTAGCGATGC TATATTAACA GCTCCAGAGA
  TGAGGTGCAG GGCATCACTA TGGAGGATAG TGCTTCTGAA CAAGAAGAGC CGTCTCTAAG
  CTGGTACCCT GGTGAACCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	PWD/PhJ
ss61574892	NES17524986	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	PWD/PhJ
rs47177352					SNP	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61574892	NES17524986	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:16422747 () rs orientation: forward

Symbol	Name	Function Class
Gm36372	predicted gene, 36372	within coordinates
Rr262937	regulatory region 262937	1410 bp distal
Rr269311	regulatory region 269311	1640 bp proximal
Rr386910	regulatory region 386910	1680 bp upstream