rs47177785 SNP Detail

Summary

• ID
  rs47177785
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134681690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACACAAAG CAGGTTATTG
  AAAGAAAATA ATCTGAGCAG TCCTGTTCAT AGAGCAATCA CAATGACCAT TCCCCCACCT
  TCCAGTGCTA TCAGAGGGGA TGGAAGTGAC ATTTTCAATC CCCCCCCCCA TTTTCATCCC
  TGATTGAAGC AAGATCTCTG AGGGTTGATT GGGCTCCAGG TCCAGAGGGA TTGGTTGTTT
  Y
  CTCCTGTGGT CCAGAGGTTA ATACACAGGG ACAGGGATGG TACATCATTG GACCACATCC
  TGGGCTGCCT CCCTGGCTGG GGGAGGAGAG CGGCCCACCA GTCATTCTGC AGATGGTTAC
  CTTGCCAGAA GGATTGGTAA CATGAACAAA GGTATCACTG AAGGATGCAA GAAGGTGGCA
  GATGCCGAAT ACATTCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60845248	NES16004335	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47177785					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60845248	NES16004335	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134681690 () rs orientation: forward

Symbol	Name	Function Class
Rr622113	regulatory region 622113	1605 bp distal
Rr622114	regulatory region 622114	1694 bp distal
Rr622115	regulatory region 622115	1507 bp distal
Rr622116	regulatory region 622116	314 bp distal
Rr622117	regulatory region 622117	1558 bp proximal