rs47178380 SNP Detail

Summary

• ID
  rs47178380
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:37513074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGATTACA TATACAGAAA
  GTGAGGAGAT TCAAAAGGTG CTCCAGGCAA ACGGAGACCA GCAGGGACCA GAGACTACCT
  GTACTTTAGT CCTAAACTTA GTAAACAAAG TGGGCTGCAA AGACTGATTA CCAGTCAAAG
  GCCATCATCG AGGCAGAGAC AAATGGATCT CCGAGTGCGA GATCAGACTG GACTCCACAG
  Y
  TCAGACCAGC CAGGGCTACA CAGTGACACC CTGTCTCAAA GAAAGGCCTT TACAGAATGA
  GAAAGCATTT TCATGTACAG CTTTAAATAA CTCATGAATT TAATATCGGA CCACATACCA
  CACGAAAGGG TCTGAAGAGG CCACTAAGGC ATGCCGCTCA AGTCTAATCT GACCTGAACT
  CTGGAAGTGT TTGGGCTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss148941446	ENSMUSSNP7028893	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss319691757	CHEV_1_37530838	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs47178380					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37513074 () rs orientation: forward

Symbol	Name	Function Class
Mgat4a	mannoside acetylglucosaminyltransferase 4, isoenzyme A	Intron
Rr396000	regulatory region 396000	650 bp upstream
Rr409534	regulatory region 409534	1807 bp distal
Rr409535	regulatory region 409535	290 bp distal
Rr409536	regulatory region 409536	within coordinates
Tssr11302	transcription start site region 11302	1462 bp downstream