rs47178439 SNP Detail

Summary

• ID
  rs47178439
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:84341067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACGGTTTG AGGTTCAATT
  ATGGCAGGCC TAAAAGGTCA AAGCGAGTAG TTATTTTATT TAGTAACATA TAAGAACTTC
  TTAGACATGA GGAGGGAAGG AAAAGGAAGG GTGGATGGAT CCTGACAGCT AAAAGATGCT
  GCAAGTGTCA GGAATCATTT TCCAGCCTGG AATTCTTTTA GGGTTCACTA GTTTCTGGCC
  R
  TTGGGAAGGA AAATTATATG AGAAGAATGT AGAATTTCGT CTAGGGTTTA AATTGTTGCT
  CAGGCACTTT TTGACTTACT ACATTGAGCC ATCTCTAATC TTTCTATGTC CTAAGTTTAG
  TGAGTGATGA AAAGATTTTT CCACCTCTAG AGAGGTAATT CTAATGGAGG GCATGCAAAT
  AAACCTAATA GCAAACATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss145209066	ENSMUSSNP4007260	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs47178439					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:84341067 () rs orientation: forward

Symbol	Name	Function Class
2610206C17Rik	RIKEN cDNA 2610206C17 gene	within coordinates
Cpgi19383	CpG island 19383	1350 bp distal
Rr400423	regulatory region 400423	1744 bp downstream
Rr650633	regulatory region 650633	1913 bp distal
Rr650634	regulatory region 650634	1412 bp distal
Tssr73446	transcription start site region 73446	1960 bp upstream
Tssr73447	transcription start site region 73447	1941 bp upstream
Tssr73448	transcription start site region 73448	1920 bp upstream
Tssr73449	transcription start site region 73449	1895 bp upstream
Tssr73450	transcription start site region 73450	1868 bp upstream
Zfand6	zinc finger, AN1-type domain 6	1843 bp upstream