rs47178627 SNP Detail

Summary

• ID
  rs47178627
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134945217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCCTCCA CCTCCCAAAT
  GCATGCCAGC TTCTTCTTTT TTAAAAAGAT TTATTTTATG TATGAGTACA CTGTATCTGT
  CTTCAGACAC ACCAGAAGAG GGCATCAGAT CCCAATACAG ATGGTTGTGA GCCACCATGT
  GGTTGCTGGG AATTGAACTC AAGACCTCTG GAAGAGCAGT CAGTGCTCTT AACCACTGAG
  Y
  CATCTCTCCA CCCCAACACA CCAGCTTCTA AAACCATCTT TTCTTGTCTC AGATCTTTAC
  ATGCAACAAA TGCCCATTAG TATTGCATTA AGCTTGGTTT GTCACAGAAT TAACATTGTG
  GCCTTGAAAG GTCACCACAC AGAATTAGAC AGTGTCAGCC CAGTTCACAA TTATCTATTG
  TCTACTATTA TAATTATTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147541493	ENSMUSSNP3103865	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321351215	CHEV_4_134773821	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47178627					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134945217 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Rr86243	regulatory region 86243	17 bp distal
Rr86244	regulatory region 86244	1584 bp proximal
Tssr43955	transcription start site region 43955	1510 bp upstream
Tssr43956	transcription start site region 43956	1479 bp upstream
Tssr43957	transcription start site region 43957	1229 bp upstream
Tssr43958	transcription start site region 43958	1093 bp upstream
Tssr43959	transcription start site region 43959	1072 bp upstream
Tssr43960	transcription start site region 43960	920 bp upstream
Tssr43961	transcription start site region 43961	861 bp upstream
Tssr43962	transcription start site region 43962	815 bp upstream
Tssr43963	transcription start site region 43963	756 bp upstream
Tssr43964	transcription start site region 43964	644 bp upstream
Tssr43965	transcription start site region 43965	706 bp downstream