rs47179169 SNP Detail

Summary

• ID
  rs47179169
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:70119395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCATTGC TACATCTACG
  TCTTCTCCTA CGGCCTTGCC AGGGAAGGCG GTTGCCGGGT ATTTTGTACC TGTGGAATTT
  GGCAGCTTAA GCAAGGGAAG GCTTCTGTAC AGCTGCGCTA ATTGGAGCTG TGTGAACCTG
  AGTGAAGATG GCTCGCGAGT GGCTAGGCCA CGCCTTCAGC TTCCCTTGTT ACCCCTTCAT
  M
  CCCTGTTTCA GTGAAATGCT CCGGGACCCA AGGTTCCGCA GTGCAGGAAC TCAAGGGCTA
  TCGCCAGAGT TATCAGTAAG GGTAGAGAGC AAGCACCTGC GAGCGTTTTT TTGGTGGCCA
  CAGATTCCCC TCTCGGCTTC TGGTGTGTCG TGAAGTCACG TTAGACTACG TGGAAGCGTG
  CTTCTCGTCC GCTGGTGAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136604753	ENSMUSSNP6012703	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47179169					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:70119395 () rs orientation: forward

Symbol	Name	Function Class
Gm26849	predicted gene, 26849	within coordinates
Gm68934	predicted gene, 68934	344 bp upstream
Myo1e	myosin IE	within coordinates
Tssr85881	transcription start site region 85881	1098 bp upstream
Tssr90403	transcription start site region 90403	369 bp upstream