rs47180186 SNP Detail

Summary

• ID
  rs47180186
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:89604702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATGAATG GTTTGAATGC
  TGCTGTCAAG AAAGAGTACT AAATGAACAT CTTAATTTGA CAAATCAGAG TGTGTGCAGA
  TGCCCTTATA AGCATCAAAA AATAATCCAG AGATGAAAAT TATTCAAAGG GAAATCTATA
  AAATAACACC TAAACTGTAC AATAAAAGGC TAAATTAGGG TTTAGAGATC ATCTGGAAAA
  R
  AATCAATGGA AACATCTCTG GAAAGTTTTC CAGTTGCAGA ATTTATGAAG TTACACACAT
  GTCCTGTGAC CTGCTAGCAC TGTCGGAAGC CTCAGAACAC TGCAAAGGCC AATGTCCCAG
  GGCAAGGGTG ATTTCCATGA AACACCACCC CTGTTACCTT GTTTATTATT TTATTTCAGA
  GATACTAAAG TTTCTTATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61194471	NES16707022	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47180186					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61194471	NES16707022	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:89604702 () rs orientation: forward

Symbol	Name	Function Class
Gc	vitamin D binding protein	Intron
Rr614258	regulatory region 614258	925 bp distal
Rr614259	regulatory region 614259	1108 bp distal
Rr614260	regulatory region 614260	1045 bp proximal
Tssr51725	transcription start site region 51725	920 bp downstream