rs47181763 SNP Detail

Summary

• ID
  rs47181763
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:117806460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAATCCTC CTGCCCCTGC
  CTCCACAGAA CTGGGATTAT AGGCAACTAA GCCAGGCCAT GTGCATTTCT AAAGTTAGAC
  ACTGTTTTCT TAACTTCATT CCCCAACACT GGTAACATGT TGCTCAACTA ACGAAGAAAG
  CAAGACACCT CTTTCCTTGA CGTTTCCTCC TGAAGCCTGA GAGAACATTC TGGCAACTTC
  R
  ACTATTCATT CAGCAACAAC AGAAGGATGA GTACTGGATC CAAGGAGCTG AGACTGGCTG
  CATAAACTTC TACTCAGGCA AGCTGTTACT GTATCACCTC ATGACCCCAT CCTGTGCTAA
  ACCTTTCCAC TTGTCATTTT TCAGCTCCTC AGGCTTGCTT TGGGCCTCCC ACTGTCTCCA
  CTCATTAAAT GCCTCAGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52609122	NES15505554	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47181763					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52609122	NES15505554	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:117806460 () rs orientation: forward

Symbol	Name	Function Class
Cdca7l	cell division cycle associated 7 like	749 bp upstream
Cpgi5229	CpG island 5229	530 bp proximal
Rr265167	regulatory region 265167	340 bp proximal
Tssr3984	transcription start site region 3984	715 bp upstream
Tssr115551	transcription start site region 115551	764 bp upstream
Tssr115552	transcription start site region 115552	969 bp upstream
Tssr115553	transcription start site region 115553	1121 bp upstream
Tssr115554	transcription start site region 115554	1148 bp upstream