rs47182729 SNP Detail

Summary

• ID
  rs47182729
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:6621292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAGATGA AAAAAAAAAA
  AGTCCATAGC ACAGGAAGAG GATACTAGAA GATGGTGATT ACATCAAAAC ATGCAAATGG
  ATGAGTGATG TGTTTGAGCA AACAGGCACT GCCTCACACT GGGTCTCAGA CATTTGCTTA
  CTTAAGGGAA GGACAAAGAT AGCATTCAAA TATATAGCAC CTAGGGTGGC AGAGCTCTGG
  Y
  CAACATTAAT GCTTTAGCTT CTTGATTGCA AAGAGGTTCA GGTAGTTGTG AGGGAGTATG
  GAGCCCTTAG AGAGCTGTGG TTGTCATTTG TCATCTAAAC AGTTGTTGGT TGAATTGTCC
  AACTGCCTAT CAGCCTGGAA GAGTGAAGTA CCAAGTCAGT CACCCAGGAC TCTTGCACAC
  TCACCTGACT TTCCTCTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62614990	NES17310646	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47182729					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62614990	NES17310646	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:6621292 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fyb1	FYN binding protein 1			Intron
				Noncoding-Transcript-Variant
Rr498833	regulatory region 498833			781 bp proximal
Tssr130533	transcription start site region 130533			1036 bp upstream
Tssr130534	transcription start site region 130534			1068 bp upstream
Tssr133626	transcription start site region 133626			877 bp downstream