rs47183743 SNP Detail

Summary

• ID
  rs47183743
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85435084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTC CGCTGAGACC CCTTTCCGAG
  A
  ACTCCCAGAA CTGGGCGGCT TTGGA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145392399	ENSMUSSNP84695	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss322751412	CHEV_8_87232354	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47183743					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85435084 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20710	CpG island 20710	1252 bp distal
Nfix	nuclear factor I/X	within coordinates
Rr178192	regulatory region 178192	517 bp proximal
Rr187001	regulatory region 187001	within coordinates
Rr187002	regulatory region 187002	316 bp proximal
Tssr78440	transcription start site region 78440	170 bp upstream
Tssr82126	transcription start site region 82126	1939 bp upstream
Tssr82127	transcription start site region 82127	50 bp downstream