rs47185825 SNP Detail

Summary

• ID
  rs47185825
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:20969962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGAGCC CTTTACAAAT
  ATAAAAGCTC CAGGCCTCAC CCAAATCATA TGAAATCAGA ATTCAGGAGA GCAGAACCAG
  GTTCTTTCAG TCCACAGACA CCCCTACTAC GGTTCACTAC TGCTACACAT GTGTGTCTCG
  TTCTCCAGCT ACCTTTTGTG AGTCCAGCTG GACGAACAAG GCCTAAAGAG CCGAAAACAC
  R
  AAACTAAATT CTGTTGGGGA GGTAAAGAAA ATGATGTAAG TGAGGCTTTC CCAAGCTGTG
  GACAGCCGTG GTCCCTGGAC TCACACAGCC TCTTCCAAGC CTGCTTCAAT TTTCAACCCA
  AACTGCTTCC TTCTCGCAGT CCCTCTTCCC CAGGATCTGG AGAGCTTGCT GCTTAACCAC
  TCAATACAAT GACTATGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61578046	NES17526212	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47185825					SNP	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61578046	NES17526212	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:20969962 () rs orientation: forward

Symbol	Name	Function Class
3110053B16Rik	RIKEN cDNA 3110053B16 gene	within coordinates
Cpgi4472	CpG island 4472	805 bp proximal
Rr463638	regulatory region 463638	194 bp proximal
Rr463639	regulatory region 463639	1084 bp proximal
Rr463640	regulatory region 463640	1508 bp proximal
Rr463641	regulatory region 463641	1555 bp proximal
Tssr115849	transcription start site region 115849	1084 bp downstream
Tssr115850	transcription start site region 115850	1257 bp downstream
Tssr115851	transcription start site region 115851	1294 bp downstream