rs47186557 SNP Detail

Summary

• ID
  rs47186557
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84497428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACCTGTGGA GCCATCCATC CCTCCTGTCC TCCCAGATTG
  GCCACAGCCA GCCAAGATCC AAGTCTGGGG TAAGTCCCAG CTAATGGCAG ACTTGGTAGG
  R
  TGGACTTGGA GATAACATAA GCCTGCTCTG AAACATGCTT TGGGACAGCA TGCCTGCCAA
  TGTGAGATGG TTTTATTGTC ATGTAACTGC TTTTATTTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146132103	ENSMUSSNP2340054	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47186557					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84497428 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9566	CpG island 9566	978 bp distal
Gm36279	predicted gene, 36279	within coordinates
Gm56881	predicted gene, 56881	586 bp downstream
Rr333589	regulatory region 333589	28 bp distal
Rr333590	regulatory region 333590	773 bp proximal
Rr340271	regulatory region 340271	627 bp distal
Rr405496	regulatory region 405496	1826 bp downstream
Thada	thyroid adenoma associated	76 bp downstream
Tssr146046	transcription start site region 146046	1374 bp downstream