rs47186921 SNP Detail

Summary

• ID
  rs47186921
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46039200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTGGCAAA CTTAAACTCC
  TGTATTCTAA AAGAACCAGT ATTAATTTAC AACACTTTAG AAGTATAATA TCACTTTTCT
  CATTAATGTA TGTATTCATT TTATATCCTG ATCACAGCCC CCCAGCCCCC TTCTAACCCT
  CATAAGTTCC TCTTCCTATT ATCCCTTCCT CTTCTCCTAA GGGGAAGCCC CCCTTGTATA
  Y
  GGCCCTGCCC TGGGACACCA AGTAGAAGCA GGAATGTGTG TGTCCTCTCC CATTGAGGTG
  CAACCTGGCA GTTCAGCTAG AGGAAGGGGA GGGTTCCAAT GGCAGGCAGC TCAGTCAGAG
  ATAGCCCTGA CATAGTTGTT AGGGGAGCCA CATGACGACA AAGCTGCACG TCTGCTATAA
  ATGTGTAGGG CACCTATGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136423325	ENSMUSSNP5426227	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47186921					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46039200 () rs orientation: forward

Symbol	Name	Function Class
Rr678056	regulatory region 678056	1176 bp distal
Rr678057	regulatory region 678057	218 bp distal
Sik3	SIK family kinase 3	within coordinates
Tssr84829	transcription start site region 84829	665 bp downstream