rs47186964 SNP Detail

Summary

• ID
  rs47186964
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81332993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAAAGAG AGAGAGGTGA
  GGCCTTTGTC TTGAAGGTGC TAGCTCTCTG ATCACAAGAC ACTCTGACTA CAGGTGTTCT
  ACAGGATTTA AGTGAATGAG TGAAAAGCTG GTTAAAAAAA TAATATTCGG GGCAGGTGGT
  AAGGTAGGAA GGCAAGAATT GGCGCGGACT TTAATGGCAG TGGGGAGATC AAGATAGCTA
  R
  AATGAGACTA GTGTGACGAT GGGAGGTCTT TAGTATCCCT GTTCATACTT GGGACATATT
  TAACCTAACA TTTTTGGTTT GCCCTATTGC AACTTCAATG GATTTGACTA GTCCCTGTGT
  CTTGGGGTAA GTTAAGATGT GAATTAAAAT TATATGTCAC TCACACCTCT AGAAATACAA
  TAAATAAGAA ATAAAAGACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61292410	NES16908887	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47186964					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61292410	NES16908887	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81332993 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1993	CpG island 1993	502 bp distal
Cpgi1994	CpG island 1994	1361 bp proximal
Ncln	nicalin	767 bp upstream
Rr402085	regulatory region 402085	574 bp downstream
Rr435684	regulatory region 435684	844 bp distal
Rr435686	regulatory region 435686	277 bp distal
Rr435687	regulatory region 435687	703 bp distal
S1pr4	sphingosine-1-phosphate receptor 4	588 bp downstream
Tssr98629	transcription start site region 98629	835 bp upstream
Tssr98630	transcription start site region 98630	772 bp upstream