rs47187297 SNP Detail

Summary

• ID
  rs47187297
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64607960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGACACG ATAGCCTAGC
  TTATCAGTTT GTACTACCCG GTCACAGGAG CCCCTCATGA GAAAGAGAGC TCTCTGACAA
  ACCTGTCGGT TTGTCTGTTA GTTGAGAATG TAAAGTTCTA TCAGAGGATA AAACTAACAA
  ACTAATAATA AATTTTCTGA GGGAAGAGAT ACTTTAGTCA CTATTCCTGG GATTTATGTT
  Y
  AGAGCAATTA AGGAAATCTA TGAAATAAGA ATGTTAATCA TGGGATGACC ATTTGGCACT
  TAGAGTGCAC TGTTATTAGT TGACTGGGGC ATGCAAGCAG AGGATGTTAG AAGCAGTTTC
  ATTACATGGA ATTAAGAACC TAGAAAAATC AGATATTTAC ACAGAAATGG GTTTAAAATG
  AGAACTTAAG ATATCTCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61830024	NES17756881	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47187297					SNP	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61830024	NES17756881	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64607960 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5783	CpG island 5783	1125 bp distal
Gm7712	predicted gene 7712	1358 bp upstream
Gm31218	predicted gene, 31218	within coordinates
Rr481888	regulatory region 481888	1321 bp distal
Rr481889	regulatory region 481889	738 bp proximal