rs47189253 SNP Detail

Summary

• ID
  rs47189253
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40586604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCACAGCAA AGGAGTTCTC
  CTAAGGAAGA GAACCCCAAC TTTCCATTAG CTTATCCAAC CCTATCATTT ATGCAAAATT
  GACGAACAAA GATTAAAACC CACGCCTATC GCAGGCGATG GGTTTGTTGA TGAGAAAGGA
  ATCCAAGAGA ACAAATTTGA CTTGCAGAGT GAATGGACTG AATGCAAGCA TAACAGTGAA
  Y
  GATGTTAACT CGTAAGGCCT GGCCTTAATG AGACATGATG GGAGGGGGAC TCAGACGTAA
  ATGAGCTTCT GGTGAACACG TTTGTGGTAA GGGAGAGAAG GTTTACGTGA GTTCTGTCAT
  CTGTAAACGT TTCAAGTGAC CCTTTTAAGT CTTTGTACAA AACCATATGA GCTGTAGGAA
  GCGTGAGGGA GGAGGCCGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss60393091	NES15896420	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs47189253					SNP	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60393091	NES15896420	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40586604 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13107	CpG island 13107	376 bp distal
Intu	inturned planar cell polarity protein	within coordinates
Rr77556	regulatory region 77556	within coordinates
Tssr28946	transcription start site region 28946	1426 bp downstream
Tssr28947	transcription start site region 28947	1299 bp downstream
Tssr28948	transcription start site region 28948	1023 bp downstream
Tssr28949	transcription start site region 28949	985 bp downstream
Tssr28950	transcription start site region 28950	893 bp downstream
Tssr28951	transcription start site region 28951	856 bp downstream
Tssr28952	transcription start site region 28952	829 bp downstream
Tssr28953	transcription start site region 28953	802 bp downstream
Tssr28954	transcription start site region 28954	750 bp downstream