rs47189707 SNP Detail

Summary

• ID
  rs47189707
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:55067294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAGAGAGA GAGAGAGATT
  AAATTACACA AAATAGAATT TAGCCAAAGG AACACTGCCT CCAAGACACC CAAAAAATAA
  ACAGTATGCT AGCCAGGCCT GTTAGAAATA AAGTTTATGA TGCCTAAGAT GTTAATGTTG
  GTTCACCAGT ATTGACCAGC CATTAGATAC GGTAGAATAC TTCTCTTAAC AGGCAGCTCA
  W
  GGGAATAGTA TAGGGTCACA AGCAATGTTA AGTCCTGATC TACAATAAAG CCCAGTTCTT
  TTCTTGAGAG AAACATAATT CTGCCAAATG GGTAAGATGA CCCCAGGTAA CAACTATTTG
  AAAAAGTACA ACACTGGTGC ACTTAAAATA ATTCTGGCAA TAACTGATGC CTAAATGACC
  AGGCAAATAG GAGTGACCTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60734987	NES16375787	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47189707					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60734987	NES16375787	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:55067294 () rs orientation: forward

Symbol	Name	Function Class
Cpgi259	CpG island 259	390 bp distal
Gm71172	predicted gene, 71172	within coordinates
Rr371303	regulatory region 371303	within coordinates
Rr411123	regulatory region 411123	1071 bp distal
Rr411124	regulatory region 411124	665 bp distal
Rr411125	regulatory region 411125	618 bp distal
Rr411126	regulatory region 411126	within coordinates
Rr411127	regulatory region 411127	707 bp proximal
Sf3b1	splicing factor 3b, subunit 1	654 bp upstream
Tssr6707	transcription start site region 6707	1759 bp downstream
Tssr6708	transcription start site region 6708	535 bp downstream
Tssr11708	transcription start site region 11708	729 bp upstream
Tssr11709	transcription start site region 11709	651 bp upstream