AAGGTTCTTC TGATCTCCCA CAGACTGGCT ACCCAGCCTT TACCTCATGG GCCTTTGGGA AGCACTGAAG ATCTAAATTA TAACAATCTT GGAACATCAG CACTGAATTT GGTGTCTATT TGAGGGACTT TAAGACTGCC AAAGCAATAG GGATTGATGA ACTTAAATAT TGGGTGACAT TTGTTGGAGC CAAAGGGACA R TGAATAAGGA AGTCTTTTCT AGAAGCCTCC AGGAATGAGA GGATATATGA ATTATTCCTT CAAAAGAAGT GAATTGATAA ACAAAATTTT CATTATTTAT TAATTTATTT ACTTTATATC TTATTGCAGC CCTATCCTCC AGGACCCCCT CACACAGCCC CTTCCCCCCA CTCTCCCTTT CCCTTCTCCT CTGAGAAGGG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss60980599 | NES16142455 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | A | G | A | A | A | G | G | A | G | G | ||
ss322121703 | CHEV_7_26199626 | CHEVERUD | SCREENING_POP | f | SNP | G | A | |||||||||||||||
SNP Consensus Information | ||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
||||
rs47189992 | SNP | A | A | A | A | A | A | G | A | A | A | G | G | G | A | G | A | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss60980599 | NES16142455 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr7:25114032 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
4732471J01Rik | RIKEN cDNA 4732471J01 gene | within coordinates | ||||||
Cxcl17 | C-X-C motif chemokine ligand 17 | 1721 bp upstream | ||||||
Tssr2143 | transcription start site region 2143 | 1805 bp upstream | ||||||
Tssr2144 | transcription start site region 2144 | 1657 bp upstream | ||||||
Tssr2145 | transcription start site region 2145 | 1633 bp upstream | ||||||
Tssr2146 | transcription start site region 2146 | 1620 bp upstream | ||||||
Tssr2147 | transcription start site region 2147 | 1575 bp upstream | ||||||
Tssr71243 | transcription start site region 71243 | 1791 bp upstream | ||||||
Tssr71244 | transcription start site region 71244 | 1766 bp upstream | ||||||
Tssr71245 | transcription start site region 71245 | 1751 bp upstream | ||||||
Tssr71246 | transcription start site region 71246 | 1722 bp upstream | ||||||
Tssr71247 | transcription start site region 71247 | 1694 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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