rs47190145 SNP Detail

Summary

• ID
  rs47190145
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191709483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCTGGGGA CCTACACATA CTCCACAAAC ACCAGCCCAG
  CTGGGTCCCT CCTCCAGTTG GTGCCTCCAG TACAACTTCT CAAAGAGGAA GAGCAGAAAG
  Y
  ACAGGAGGCA GCCAGCAGTG GAAGAGGCAG AGGGCGGCCG AGGATGGAGC TCACTCTTCA
  ACTCCTGCCA GTTTGCCGCT CAACTTTCTA CTTTCCCTAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60361411	NES15865149	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47190145					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60361411	NES15865149	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191709483 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm70525	predicted gene, 70525			1181 bp downstream
Gm70534	predicted gene, 70534			within coordinates
Rd3	retinal degeneration 3			Intron
				mRNA-UTR
Rr426276	regulatory region 426276			139 bp distal
Rr426277	regulatory region 426277			within coordinates
Rr426278	regulatory region 426278			1765 bp proximal
Tssr10797	transcription start site region 10797			133 bp downstream
Tssr10798	transcription start site region 10798			122 bp downstream
Tssr10799	transcription start site region 10799			77 bp downstream
Tssr10800	transcription start site region 10800			725 bp upstream
Tssr10801	transcription start site region 10801			762 bp upstream