rs47190972 SNP Detail

Summary

• ID
  rs47190972
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101128843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTCTTGA TCATTTTCCG
  GGGGATCCAT CTCCACCCAG GAGCCCCTCC AGCTGCAGGA CCAACTTCAG TGAAATTTGA
  GGGTGCCCTG GAGGAGGGAG AAGTCCATCT TTTTGTTTCC GAATAAGTCA TTGGCCACAC
  GCCACACAAA CAACAAATGA AAGCATGGCA GGTGTGGGAA TGAGGTACAC AGGGAGCACG
  W
  GCAGCACCCC CCAGGGAGCC ACACAGTATG CCCACTTCTG CTTGGGGTGA TGCAAGATTC
  TGCTTTTCCA GCATGAGGCA GCCAGTGACG TGAGGGAGGC ACCAGGAATG CAGGGACTGG
  TAGAGGCCTG CATGGGAAAG CATTGTGTGT TACCAATGAG TGATCTGAGT GATCAATGAG
  TGGGCTGAGT GATCTGTGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss135545521	ENSMUSSNP4752335	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47190972					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101128843 () rs orientation: forward

Symbol	Name	Function Class
Gm65590	predicted gene, 65590	within coordinates
Rr581978	regulatory region 581978	1429 bp distal