rs47191673 SNP Detail

Summary

• ID
  rs47191673
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135764125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGCACCTGC CAAAATAGCA GCCAACACCC
  CCCATTGTGT TGTTCCCCCC CCCCCCCATC TCCTGCTGCA CATTCCTCCC TCCGCGGGGC
  TTGGCTCACA AGGCCCCAGC CCACATGCCT GCTTAAAGCT CTCCCCATGC CCTGCCCTCA
  R
  CCAGTCCCTG CTGAGGCTGA ACAGATACCT CAAGACCTGT GTGCAGTCCC TGTTCAGAGG
  TAAGACAAGG GGGAGCTCTA GGAAGGGACA GAGGTCAGTG GGGGAACATG AGGGATTTGT
  TCCTGACATC TCTCCTTAGT CTTTTGCTTG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145547968	ENSMUSSNP3486056	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss319993824	CHEV_1_137732964	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47191673					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135764125 () rs orientation: forward

Symbol	Name	Function Class
Rr419292	regulatory region 419292	1524 bp distal
Rr419293	regulatory region 419293	1960 bp distal
Rr419294	regulatory region 419294	within coordinates
Rr419295	regulatory region 419295	37 bp proximal
Rr419296	regulatory region 419296	505 bp proximal
Rr419297	regulatory region 419297	1362 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr9005	transcription start site region 9005	within coordinates