rs47191784 SNP Detail

Summary

• ID
  rs47191784
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:74270683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GACTCACAGT GCCTGGTTAG GGAAGGCTTT TTTTTTTTTT
  TTTTTTTTTT TTTTTTATTA TTTATTTCTT GCTGCCTCCT CTTCCCATTC ATTTAACCCG
  K
  GGATCTGGCA CTAGGCTCTC CTTGCATCTG CTATCTGACT GCGTTTTTCA GTAAGGTTTG
  TGCTGTGTGT TGCTGTAACT AGATGGTACT GACTTTTTCA C                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss144625209	ENSMUSSNP5964186	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs47191784					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:74270683 () rs orientation: forward

Symbol	Name	Function Class
0610040A22Rik	RIKEN cDNA 0610040A22 gene	567 bp upstream
Cpgi5859	CpG island 5859	819 bp distal
Gm41003	predicted gene, 41003	within coordinates
Rr281645	regulatory region 281645	within coordinates
Slc9a3	solute carrier family 9 (sodium/hydrogen exchanger), member 3	within coordinates
Tssr120348	transcription start site region 120348	1143 bp downstream
Tssr120349	transcription start site region 120349	1118 bp downstream
Tssr120350	transcription start site region 120350	30 bp downstream