rs47191880 SNP Detail

Summary

• ID
  rs47191880
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48652997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAC CGCAGGTGGC CCCACCTCCG
  T
  GGCAACAAGG TCTGTACCCG CCCGC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133165808	ENSMUSSNP2754506	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321794343	CHEV_6_48626062	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47191880					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48652997 () rs orientation: forward

Symbol	Name	Function Class
Gimap9	GTPase, IMAP family member 9	87 bp upstream
Gm46958	predicted gene, 46958	within coordinates
Rr629719	regulatory region 629719	789 bp distal
Rr629720	regulatory region 629720	within coordinates
Tssr56160	transcription start site region 56160	1230 bp downstream
Tssr56161	transcription start site region 56161	854 bp downstream
Tssr56162	transcription start site region 56162	51 bp upstream
Tssr56163	transcription start site region 56163	97 bp upstream
Tssr56164	transcription start site region 56164	130 bp upstream
Tssr56165	transcription start site region 56165	345 bp upstream
Tssr56166	transcription start site region 56166	1610 bp upstream