rs47193519 SNP Detail

Summary

• ID
  rs47193519
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61862778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCTGGGT GTCCATCCCT
  ACCTAGCATC CTCCTGGCAT CCTCCTCCTC CTCTCTCCAT CTCTGGACCA GTCTTGCCAT
  TTGCCGTCCC CAGAGTCTCA GATTCACCCC TTTCTCTAGA AGCTTCTGGC TCTGCTGGAG
  TTTCCCAAAG AATTCCTCAA ATAGACTCAT TTATTAGTTA CTTCAGTGCC TGGTTGCCCC
  R
  TAAGCCCAGA ATTTCTTCTT CCATTTCTTT TGGGGGTGTC ATATGATCCC ACACCCCGGG
  GTTTTGTGGA AAGACAGATC TGTCCGTCTC TCCCAAGGCC CCATTTGAGT CCTGCTCTTG
  CATTAAGTGG AGACTCCAAA GCTCGTCAGA ATACATCATG TTTTGGGGAA AAATCTTAGC
  AGCTTGCACA GGAGGCCAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61280183	NES16887333	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		A	A	A		G
ss323330477	CHEV_10_61489747	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47193519					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61280183	NES16887333	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61862778 () rs orientation: forward

Symbol	Name	Function Class
Gm47919	predicted gene, 47919	1384 bp downstream
Gm66887	predicted gene, 66887	within coordinates