rs47193564 SNP Detail

Summary

• ID
  rs47193564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:41366821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTATAAT AGCTTAATGT
  AAGTAAAGTT GCTATTTCTC ATTTGAAAAA AACTGGAAGC TGTGTACCAC AACAACCACC
  CTATCCATAC AGTCTGCGAA TAGGAAATGA GGAACCCTAG TCACGTGACA GACAAAGCAA
  GGTGTTAGTG CCAAATGGGG AGGTAGATGC CTTCATAGAA ATCAGAAATG AGAACATGTA
  Y
  ATTATCCTTA GATGGGTGTA GTGGGCCATC TCTTTTTCCC AATGGAAAAG GAAGTGGGGT
  GTGTGTATGG CAAAGAAGAT GGTGAAGAAC TTGCTGTTAT AGCAGGGCAA CCCACTAGGA
  CTGAGAAACA CAGGGAAAGG ATGTGTACCG ACTCTGCCTT CTGTTCTGAC CTCCATAGCT
  TTCCTCATCC TGGGCTTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60600906	NES16305391	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs47193564					SNP	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60600906	NES16305391	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41366821 () rs orientation: forward

Symbol	Name	Function Class
Rr662625	regulatory region 662625	950 bp proximal
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	Intron
Tssr77038	transcription start site region 77038	1147 bp downstream
Tssr77039	transcription start site region 77039	174 bp upstream
Tssr77040	transcription start site region 77040	219 bp upstream
Tssr77041	transcription start site region 77041	1127 bp upstream
Tssr77042	transcription start site region 77042	1269 bp upstream
Tssr77043	transcription start site region 77043	1864 bp upstream