rs47194193 SNP Detail

Summary

• ID
  rs47194193
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131645912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGTACTG GCAGGGCCAC
  CTGGGGCAAG GAACTCCTCC TCTCTGGGAC TCAGCCTTCA GGAAATAGAG CCTTGGGAGT
  CTGGGTTCAT CTTGTGAAAC AGGGCTCACA CTCAACTGCT CCCAGTCCGG CTCTACCATT
  CTGCTAGGAT GGAGCAGGAC CACACTCTGT CCTTTGGACA ACTCTAAAGT CTTAGCTGAC
  S
  GAGCTGATAC ACCTCTAGGT TAAAGTCACT AGGGACAGGG GTGTACAGAG CACACTGCCG
  CCAGCTGTCT CCTCTAGAGA TGGCTCGGGC TGCACACGCC CTCCTGGTTT AAAGAGAAGA
  TGAGGATTCC AGACCCTGCA CATGGTAGGG CTGTGCCCGC TTGTCTTCTC GTTTTTTTTC
  CTGTGTGTGT GCGCGCGCGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147471948	ENSMUSSNP6615841	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47194193					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131645912 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14946	CpG island 14946	1838 bp distal
Cpgi14947	CpG island 14947	1110 bp proximal
Gm12992	predicted gene 12992	within coordinates
Rr85750	regulatory region 85750	1312 bp distal
Rr85751	regulatory region 85751	712 bp distal
Rr100128	regulatory region 100128	within coordinates
Tssr39357	transcription start site region 39357	1967 bp upstream