rs47194709 SNP Detail

Summary

• ID
  rs47194709
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:47011315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGGAGCTT TGGTTCCCAT
  GGCAACTCTG AAGTTCCACC TACTGCAACT TCCTCATTCT CTGAGCTTCT TCCTCTTCCA
  CCATAGTGGG GGGGGGTGGG GGGGGCAGGA GAATAAAGCC ATTAACTAGT TTGTGTGTTG
  CACTTCTCAG CTGACACTGC GCTCCAGCTC CAGCGTGTAT GACCTCAGTC CTCGCTGCAA
  T
  CTAGACACAG AGCATCTGCT GTCTCTGTCT TGCACAGGGA AACCCAGGCT CCAGAGACAG
  GTGATATGTT TTGCTTGCCC TCATTGGTGT CAACAGGACT TCAACCAGGT CTCATGTCTC
  TGGACCTCGG GTGGGATGAG CATACCCTAG CACTCCCTCT GCTGTGCTTA CAATTCCTAA
  GTGGCGAATT TCATATGTAA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss146270566	ENSMUSSNP6641445	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs47194709					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:47011315 () rs orientation: forward

Symbol	Name	Function Class
Gm568	predicted gene 568	114 bp upstream
Gm68750	predicted gene, 68750	within coordinates
Rr367622	regulatory region 367622	578 bp downstream
Rr376427	regulatory region 376427	1345 bp upstream
Tssr37147	transcription start site region 37147	47 bp downstream
Tssr41615	transcription start site region 41615	508 bp upstream
Tssr41616	transcription start site region 41616	176 bp upstream