rs47196184 SNP Detail

Summary

• ID
  rs47196184
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89926113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAAAGAGC ACCTGAGTTC
  AATTCCTATC GCATATATTA GACAGCTCAC AACCACCTGT AACTCCACTC CAGGGATTCT
  GATGTCTCTG GCTTCTTAGG GTACCAGCAC TCATATGCAC ACAGCCACTA CCCCCACCAA
  ATAGTTTAAA ATAAAACAAT TCTTAGGACC CATCCTGCTA GACAGGTACT TCAGACCATC
  K
  TAGGTATATG TTATCCCTTT TACCAGAGTA ACGTAGATTT ACTAATATAT ATGCACCCCG
  AAGGTTAGCA ATCTGATCTT CTATGAGGAA AGGACAGGTA TTTGAGACAG TTTTTGCCAT
  AACCAACAAA TCTTTATTGC AAAGAGAAAT GTTCTGAATC TTGAGGGTCC TCCACATTTG
  CTGAAAATAA TGTTTAGTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60423017	NES15924691	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47196184					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60423017	NES15924691	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89926113 () rs orientation: forward

Symbol	Name	Function Class
Tssr34182	transcription start site region 34182	1975 bp upstream
Tssr34183	transcription start site region 34183	1193 bp upstream
Tssr34184	transcription start site region 34184	326 bp upstream
Tssr34185	transcription start site region 34185	391 bp downstream
Tssr34186	transcription start site region 34186	426 bp downstream
Ubap2l	ubiquitin-associated protein 2-like	within coordinates