rs47197666 SNP Detail

Summary

• ID
  rs47197666
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52846230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGCTTAT ATAAGTTTCT
  CCTTCGTTAT ATAATATTTC TTTGTTCAGT GGAATTTTGG TACATTTAAA TTTTTGAATA
  TGTCACTGTG GTACCAGGTT CAGCCTCCCT TCTCAGGGTG TGCAGGTGCC ACCAGCAAAC
  TGGGGGTCCA CAGTCTGCAT AAGTCAGATA CTGTTCCAGG AGGGGGTGAA GTGGAGTGGG
  R
  CGGGAAGAAA AGAGAGTATG AAGCAGCTCT CTGAGACAAT CCTGGCTTGT TCATATTTCT
  CTATTGGGGA TATGGTGGTG GGTTTGAATT AAACAAAAGG TTATATAGTT TCTGGGGAAG
  GGCGTGAGAA TATCCAGGGA GGGAAAGGGC ACTCATTGCC TGAAGGATTC TGCTACTGAG
  ATGCCTCGTT AGTTCGGCGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss137742250	ENSMUSSNP7189640	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss324040933	CHEV_12_53900434	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47197666					SNP	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52846230 () rs orientation: forward

Symbol	Name	Function Class
Akap6	A kinase anchor protein 6	within coordinates
Gm51971	predicted gene, 51971	within coordinates
Gm59837	predicted gene, 59837	43 bp downstream
Rr466054	regulatory region 466054	277 bp proximal