rs47197891 SNP Detail

Summary

• ID
  rs47197891
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14464480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTTGCAA GAGCAGCCAG
  TGCTCTTAAC TGTTTAGCCA GGTTTAGCCC CTGTGGCTAA CTTCTTATTT ATTAATAAGA
  AGTATTTATT AATACTCTTG TAATATAGGG AATAGAAATA TGGCACCTGT GTTCTTGGTA
  CCAGTTAATT TTTCTAAAGT TCACCTTTAT GGGTTGGGGA GTAAGGAAGA TAGTGTTAGA
  R
  CGCTCACCCA GGAAGTGATA GGCCCTGGGT TAATCCCTGG CATAGCTAAA TAAGCAAATT
  ATGGTTCTCT GATCATCAGG GAGTCTTTAG CGCTCTCCAA GACAGACAGA CAGACAGACA
  CACACACACA CACACACACC TCTCTCCATG GAAGACAGCA GGTAGACTGG TTTGTAAAGT
  AATAGTAGGC TCATTATTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62079962	NES17153423	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	A	A	G	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47197891					SNP	G	A	A	A	A	A	A	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62079962	NES17153423	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14464480 () rs orientation: forward

Symbol	Name	Function Class
Abhd6	abhydrolase domain containing 6	within coordinates
Cpgi6154	CpG island 6154	1954 bp proximal
Gm30244	predicted gene, 30244	1239 bp upstream
Gm62231	predicted gene, 62231	1790 bp downstream
Rr296822	regulatory region 296822	720 bp proximal
Tssr124225	transcription start site region 124225	1239 bp upstream
Tssr124226	transcription start site region 124226	1297 bp upstream
Tssr127395	transcription start site region 127395	1248 bp upstream
Tssr127396	transcription start site region 127396	1236 bp upstream